TODO

  1. CV of reps
  2. ICC
  3. min diff
  4. max diff
REPLICATE NUMBER_FCS_FILES
A_panel1_QC_FALSE 21
A_panel1_QC_TRUE 21
A_panel2_QC_FALSE 15
A_panel2_QC_TRUE 15
B_panel1_QC_FALSE 11
B_panel1_QC_TRUE 11
B_panel2_QC_FALSE 6
B_panel2_QC_TRUE 6
C_panel1_QC_FALSE 17
C_panel1_QC_TRUE 17
C_panel2_QC_FALSE 10
C_panel2_QC_TRUE 10
D_panel1_QC_FALSE 13
D_panel1_QC_TRUE 13
D_panel2_QC_FALSE 7
D_panel2_QC_TRUE 7
E_panel1_QC_FALSE 16
E_panel1_QC_TRUE 16
E_panel2_QC_FALSE 11
E_panel2_QC_TRUE 11
F_panel1_QC_FALSE 24
F_panel1_QC_TRUE 24
F_panel2_QC_FALSE 17
F_panel2_QC_TRUE 17
G_panel1_QC_FALSE 19
G_panel1_QC_TRUE 19
G_panel2_QC_FALSE 12
G_panel2_QC_TRUE 12
H_panel1_QC_FALSE 16
H_panel1_QC_TRUE 16
H_panel2_QC_FALSE 13
H_panel2_QC_TRUE 13

Prop of files with lymph counts > 50K = 0.9709101 Prop of files with lymph counts < 50K = 0.0290899

Total number of Control fcs files (currently) = 228

Total number of Control groups (currently) = 32

Percent of parent CV summary

GROUP GROUP_MEDIAN_CV GROUP_MAD_CV
A_panel1_QC_FALSE 12.272625 11.107100
A_panel1_QC_TRUE 12.436942 11.325725
A_panel2_QC_FALSE 28.538720 32.665617
A_panel2_QC_TRUE 18.864053 20.993672
B_panel1_QC_FALSE 13.331114 11.763628
B_panel1_QC_TRUE 9.701616 7.589086
B_panel2_QC_FALSE 20.462495 12.525710
B_panel2_QC_TRUE 20.825569 17.852932
C_panel1_QC_FALSE 13.000531 10.160992
C_panel1_QC_TRUE 13.047864 10.229029
C_panel2_QC_FALSE 13.066676 8.490787
C_panel2_QC_TRUE 11.408774 7.949658
D_panel1_QC_FALSE 22.467768 12.798744
D_panel1_QC_TRUE 22.251881 13.631918
D_panel2_QC_FALSE 24.106595 22.723597
D_panel2_QC_TRUE 22.456713 24.929498
E_panel1_QC_FALSE 25.533634 17.647690
E_panel1_QC_TRUE 25.543367 18.212987
E_panel2_QC_FALSE 13.685761 15.974898
E_panel2_QC_TRUE 14.190213 14.782765
F_panel1_QC_FALSE 20.543881 19.909704
F_panel1_QC_TRUE 20.695217 22.166562
F_panel2_QC_FALSE 18.362233 20.396598
F_panel2_QC_TRUE 14.688611 16.206750
G_panel1_QC_FALSE 14.005662 14.037513
G_panel1_QC_TRUE 13.789122 12.771582
G_panel2_QC_FALSE 19.133298 17.710588
G_panel2_QC_TRUE 17.992290 22.402413
H_panel1_QC_FALSE 14.579431 15.491014
H_panel1_QC_TRUE 14.494121 15.508870
H_panel2_QC_FALSE 29.211024 35.232166
H_panel2_QC_TRUE 26.626490 31.497145

Percent of base population (lymph/PBMC) CV summary

GROUP GROUP_MEDIAN_CV GROUP_MAD_CV
A_panel1_QC_FALSE 13.57277 11.934829
A_panel1_QC_TRUE 13.31459 12.239107
A_panel2_QC_FALSE 46.57730 57.204416
A_panel2_QC_TRUE 44.31405 56.224622
B_panel1_QC_FALSE 15.71970 10.153693
B_panel1_QC_TRUE 14.40379 10.024843
B_panel2_QC_FALSE 26.31572 35.680507
B_panel2_QC_TRUE 40.12923 47.780114
C_panel1_QC_FALSE 13.93732 8.238980
C_panel1_QC_TRUE 13.88289 8.225841
C_panel2_QC_FALSE 33.96949 34.041385
C_panel2_QC_TRUE 20.69576 26.506678
D_panel1_QC_FALSE 32.07195 5.371037
D_panel1_QC_TRUE 32.39314 4.717194
D_panel2_QC_FALSE 38.63686 49.272540
D_panel2_QC_TRUE 38.79263 49.441531
E_panel1_QC_FALSE 28.17266 22.784927
E_panel1_QC_TRUE 28.13049 22.737928
E_panel2_QC_FALSE 27.75145 37.136524
E_panel2_QC_TRUE 30.82295 32.735358
F_panel1_QC_FALSE 27.92320 25.322427
F_panel1_QC_TRUE 28.03086 25.306427
F_panel2_QC_FALSE 21.38813 26.820678
F_panel2_QC_TRUE 22.32373 24.866998
G_panel1_QC_FALSE 16.22027 12.756416
G_panel1_QC_TRUE 15.84141 12.125204
G_panel2_QC_FALSE 35.58814 28.654717
G_panel2_QC_TRUE 34.54508 46.149196
H_panel1_QC_FALSE 32.46109 14.221776
H_panel1_QC_TRUE 32.23588 14.591901
H_panel2_QC_FALSE 72.18926 86.660400
H_panel2_QC_TRUE 73.23556 102.525342

Replicate data clustering